Preprints
Bioenergetic reprogramming of macrophages reduces drug tolerance in Mycobacterium tuberculosis.
Yadav V, Sahoo S, Malhotra N, Mishra R, Rajmani RS, Shanmugam S, Shandil RK, Narayanan S, Thacker VV, Jolly MK, Seshasayee ASN, Singh A (2025). bioRxiv: 634842
An integrative molecular systems approach unravels mechanisms underlying biphasic nitrate uptake by plant nitrate transporter NRT1.1.
Subhadarshini S, Sahoo S, Jolly MK, Rashid M (2025). bioRxiv: 635294
Topological conditions of gene regulatory networks enabling robust binary cell-fate decision-making.
Shyam S, Nandhan N, Jolly MK, Hari K (2025). bioRxiv: 636066
Epithelial to Mesenchymal Transition in the Endometrium Mediated by HOXA10 drives Embryo Implantation.
Ashary N, Suresh S, Bhide A, Shyamal S, N Pranya, Mishra A, A Anuradha, Hansda S, BV Harshavardhan, Jolly MK, Modi D (2025). bioRxiv: 631632
TGFβ-ANGPT2-Tie2 axis in cancer-associated fibroblasts reprograms oral cancer cells to embryonic-like cell state with predictive significance of poor prognosis.
Mitra P, Saha U, Stephen KJ, Prasad P, Patel AK, BV Harshvardhan, Mondal SK, Kurkalang S, Roy S, Ghosh A, Roy SS, Sarma JD, Biswas NK, Acharya M, Sharan R, Arun P, Jolly MK, Maitra A, Singh S (2024). bioRxiv: 601319
Exploring the role of EMT in Ovarian Cancer Progression: Insights from a multiscale mathematical model.
Oliver S, Williams M, Jolly MK, Gonzalez D, Powathil G (2024). bioRxiv: 600568
Collective amoeboid dynamics drives colonization of drug-resistant ovarian cancer cells.
Goutham S, Gopikrishnan A, BV Harshavardhan, Venas N, Sabarinathan RK, Jolly MK, Bhat R (2024). bioRxiv: 616763
DNA walk of specific fused oncogenes exhibit distinct fractal geometric characteristics in nucleotide patterns.
Das A, Sehgal M, Singh A, Goyal R, Prabhakar M, Fricke J, Mambetsariev I, Kulkarni P, Jolly MK, Salgia R (2024). bioRxiv: 602166
Differential expression of oncogenic lncRNAs NEAT1 and MALAT1 in 2D monolayer vs. 3D tumoroid culture and its implications in cancer progression.
Ghosh A, Soundharya R, Jolly MK, Majumder A (2024). bioRxiv: 619405
A multi-level formalism to capture the characteristics of hybrid phenotypes in Epithelial-Mesenchymal Plasticity.
Hari K, Tripathi S, Anand V, Jolly MK, Levine H (2024). bioRxiv: 625479
Mechano-sensing role of oncogenic lncRNA NEAT1 on soft vs. stiff substrates and its implications for glioblastoma progression.
Ghosh A, Soundharya R, Jolly MK, Majumder A (2024). bioRxiv: 624463
Metastatic organotropism in small cell lung cancer.
Krishnamurthy M, Dhall A, Sahoo S, Schultz CW, Baird MA, Desai P, Odell J, Takahashi N, Nirula M, Zhuang S, Huang Y, Schroeder B, Zhang Y, Thomas MS, Redon C, Robinson C, Thang L, Ileva L, Patel NL, Kalen JD, Varlet AA, Sopilniak NZ, Jha A, Wangsa D, Butcher D, Morgan T, Afzal AN, Chari R, Baktiar K, Kumar S, Pongor L, Difilippantonio S, Aladjem MI, Pommier Y, Jolly MK, Lammerding J, Sharma AK, Thomas A (2024). bioRxiv: 617066
An integrative phenotype-structured partial differential equation model for the population dynamics of epithelial-mesenchymal transition.
Guilberteau J, Jain P, Jolly MK, Duteil NP, Pouchol C (2023). aRxiv: 2309.09569
GPX4-VIM equates a proliferating DTP state in TNBC subtypes with converged vulnerabilities to autophagy and glutathione inhibition.
Chaudhury N, Choudhary BS, Patra S, Malvankar S, Shivashankar A, Jog E, Kailje VV, Khanna S, Manna S, Sahoo S, Soundharya R, Jolly MK, Dalal SN, Verma N (2023). bioRxiv: 541287
Cell-autonomous BMP signaling plays a key role in the maintenance of tumour cell EMT and migration programs in human ovarian carcinoma.
Joun G, Zolghadr F, Chakraborty P, Yen LLT, Chong JJH, Bowtell D, DeFazio A, Jolly MK, Seyedasli N (2023). bioRxiv: 538847
Mechanistic modeling of the SARS-CoV-2 and immune system interplay unravels design principles for diverse clinicopathological outcomes.
Sahoo S, Hari K, Jhunjhunwala S#, Jolly MK# (2020). bioRxiv: 097238
AMPK-Fyn signaling promotes Notch1 stability to potentiate hypoxia-induced breast cancer stemness and drug resistance.
Lahiry M, Kumar S, Hari K, Chedere A, Jolly MK#, Rangarajan A# (2020). bioRxiv: 458489
Feedback loops involving AMPK, ERK and TFEB in matrix detached leads to non-genetic heterogeneity.
Kumar S, Hari K, Jolly MK#, Rangarajan A# (2019). bioRxiv: 736546