Preprints
Gene Regulatory Networks that support Multi-Fate Cellular Decisions
Harshavardhan BV, Adigwe S, Jolly MK, Gedeon T(2026). bioRxiv:738161
Weak form Scientific Machine Learning for Systems Biology: A Tutorial on WENDy.
Heitzman-Breen N, Rainey Lyons R, Jain P, Jolly MK, Bortz DM (2026). bioRxiv:735880
Early Detection of Sudden Transitions in Notch signaling.
Tikader B, Sarkar S, Sinha SK, Levine H,Jolly MK, Dutta PS (2026). bioRxiv:703083
Decoupling of spatial scales in breast pathology reveals fractal-like nuclear organization emergent from tissue spatial architecture.
Das A, Ahammer H, Prabhu JS, Bhat R, Jolly MK (2026). MedRxiv:26352267
Bidirectional coupling among EMT, AXL-RB1 signaling and lineage switch drives resistance to osimertinib and worse clinical outcomes in NSCLC.
Vashista S, Meena RK, Kulkarni P, Salgia R, Thomas A, Jolly MK (2026). bioRxiv: 719547
Time-dependent memory of hypoxia exposure influences tumor invasion dynamics.
Sadhu G, Jain P, Meena RK, George JT, Jolly MK (2026). bioRxiv: 716866
A Single Equation Explains Go-or-Grow Dynamics in Cyclic Hypoxia.
Sadhu G, Maini PK, Jolly MK. arxiv: 23042
Traveling Wave Analysis of a Go-or-Grow Invasion Model with ECM-Regulated Phenotypic Switching.
Sadhu G, Jolly MK, Maini PK. bioRxiv: 720361
Multi-team conflict resolution is ineffective for stable decision making.
Haldar K, Anand V, Moger A, Gedeon T, Hari K, Jolly MK (2025). bioRxiv: 679762
A phenotype-structured PDE framework for investigating the role of hypoxic memory on tumor invasion under cyclic hypoxia.
Sadhu G, Jain P, George JT, Jolly MK (2025). bioRxiv: 684650
Interconnected axes of phenotypic plasticity drive coordinated cellular behaviour and worse clinical outcomes in breast cancer.
Meena RK, Fan Y, Soundharya R, Pandey AJ, Kannan A, Subramanian Y, Subramanian Y, George JT, Jolly MK (2025). bioRxiv: 688595
Regulatory network and spatial modeling reveal cooperative mechanisms of resistance and immune escape in ER+ breast cancer.
Yijia Fan, Sahoo S, Jolly MK, George JT (2025). bioRxiv: 679692
Multi-omics investigation reveals molecular determinants of cancer cell evolution on soft extracellular matrix.
Sahoo S, Khanna S, Wang TC, Lele TP, Jolly MK (2025). bioRxiv: 694784
ONCOchannelome: A computational framework for investigating altered ion channels across tumor types.
Parthasarathi KTS, Soundharya R, Jolly MK, Jyoti Sharma (2025). bioRxiv: 685767
How memory and adaptation cost shape cell phenotypic dynamics in response to fluctuating environments.
Jain P, Jolly MK#, George JT# (2025). bioRxiv: 655868
Balance between autophagy and apoptosis determines anoikis resistance: a mathematical model on cell fate.
Maiti S, Chedere A, Jolly MK, Chandra N, Rangarajan A (2025). bioRxiv: 658583
Cell-autonomous BMP signaling plays a key role in the maintenance of tumour cell EMT and migration programs in human ovarian carcinoma.
Joun G, Zolghadr F, Chakraborty P, Yen LLT, Chong JJH, Bowtell D, DeFazio A, Jolly MK, Seyedasli N (2023). bioRxiv: 538847
Mechanistic modeling of the SARS-CoV-2 and immune system interplay unravels design principles for diverse clinicopathological outcomes.
Sahoo S, Hari K, Jhunjhunwala S#, Jolly MK# (2020). bioRxiv: 097238
AMPK-Fyn signaling promotes Notch1 stability to potentiate hypoxia-induced breast cancer stemness and drug resistance.
Lahiry M, Kumar S, Hari K, Chedere A, Jolly MK#, Rangarajan A# (2020). bioRxiv: 458489